2023
Dosage differences in 12-OXOPHYTODIENOATE REDUCTASE genes modulate wheat root growth
Gilad Gabay, Hanchao Wang, Junli Zhang, Jorge I. Moriconi, German F. Burguener, Leonardo D. Gualano, Tyson Howell, Adam Lukaszewski, Brian Staskawicz, Myeong-Je Cho, Jaclyn Tanaka, Tzion Fahima, Haiyan Ke, Katayoon Dehesh, Guo-Liang Zhang, Jin-Ying Gou, Mats Hamberg, Guillermo E. Santa-María & Jorge Dubcovsky. Nature Communications, (2023) Link
Parasitic nematode secreted phospholipase A2 suppresses cellular and humoral immunity by targeting hemocytes in Drosophila melanogaster
Sophia C. Parks, Ogadinma K. Okakpu, Pakeeza Azizpor, Susan Nguyen, Stephanie Martinez-Beltran, Isaiah Claudio, Kyle Anesko, Anil Bhatia, Harpal S. Dhillon and Adler R. Dillman. Frontiers in Immunology, (2023) Link
2022
The final piece of the Triangle of U: Evolution of the tetraploid Brassica carinata genome
Won Cheol Yim, Mia L Swain, Dongna Ma, Hong An, Kevin A Bird, David D Curdie, Samuel Wang, Hyun Don Ham, Agusto Luzuriaga-Neira, Jay S Kirkwood, Manhoi Hur, Juan KQ Solomon, Jeffrey F Harper, Dylan K Kosma, David Alvarez-Ponce, John C Cushman, Patrick P Edger, Annaliese S Mason, J Chris Pires, Haibao Tang, Xingtan Zhang. The Plant Cell, (2022) Link
Targeted metabolomics using LC-MS in Neurospora crassa
Carrillo, A. J., Halilovic, L., Hur, M., Kirkwood, J. S., & Borkovich, K. A. Current Protocols, 2, e454. doi: 10.1002/cpz1.454 (2022) Link
Pollen diet mediates how pesticide exposure impacts brain gene expression in nest-founding bumble bee queens
Claudineia P.Costa, Mar Leza, Michelle A.Duennes, Kaleigh Fisher, AlyssaVollaro, Manhoi Hur, Jay S.Kirkwood S. HollisWoodard. Science of The Total Environment (2022) Link
Functional genomics of RAP proteins and their role in mitoribosome regulation in Plasmodium falciparum
Thomas Hollin, Steven Abel, Alejandra Falla, Charisse Flerida A Pasaje, Anil Bhatia, Manhoi Hur, Jay S Kirkwood, Anita Saraf, Jacques Prudhomme, Amancio De Souza, Laurence Florens, Jacquin C Niles, Karine G Le Roch. Nature Communications (2022) Link
Omega-6 and Omega-3 Fatty Acid-Derived Oxylipins from the Lipoxygenase Pathway in Maternal and Umbilical Cord Plasma at Delivery and Their Relationship with Infant Growth
Maranda Thompson, Arzu Ulu, Ana G Yuil-Valdes, Maheswari Mukherjee, Melissa Thoene, Matthew Van Ormer, Rebecca Slotkowski, Elizabeth Lyden, Ann Anderson Berry, Corrine K Hanson, Tara M Nordgren, Sathish Kumar Natarajan, Int. J. Mol. Sci (2021) Link
Aspirin-Triggered Resolvin D1 Reduces Chronic Dust-Induced Lung Pathology without Altering Susceptibility to Dust-Enhanced Carcinogenesis
Edward C. Dominguez,Rattapol Phandthong, Matthew Nguyen, Arzu Ulu, Stephanie Guardado, Stefanie Sveiven, Prue Talbot andTara M. Nordgren, Cancers (2021) Link
2021
In Planta Labeling Using a Clickable ER-Disrupting Probe Suggests a Role for Oleosins in Arabidopsis Seedling ER Integrity
Wim Dejonghe, Aditya S. Vaidya, Simon E. Alfred, and Sean R. Cutler, ACS Chem. Biol (2021) Link
A Unique Sulfotransferase-Involving Strigolactone Biosynthetic Route in Sorghum
Sheng Wu and Yanran Li, Int. Frontiers in Plant Science (2021) Link
Utilizing Systems Biology to Reveal Cellular Responses to Peroxisome Proliferator-Activated Receptor γ Ligand Exposure
Vanessa Cheng, Aalekhya Reddam, Anil Bhatia, Manhoi Hur, Jay S Kirkwood, David C Volz. Current Research in Toxicology (2021) Link
2020
Lipid and protein corona of food-grade TiO2 nanoparticles in simulated gastrointestinal digestion
Coreas R, Cao X, Deloid GM, Demokritou P, and Zhong W. NanoImpact (2020) Link
PD-1 pathway regulates ILC2 metabolism and PD-1 agonist treatment ameliorates airway hyperreactivity
Helou DG, Shafiei-Jahani P, Lo R, Howard E, Hurrell BP, Galle-Treger L, Painter JD, Lewis G, Soroosh P, Sharpe AH, and Akbari O. Nat Commun (2020) Link
Metabolomic profiles in the brains of juvenile steelhead (Oncorhynchus mykiss) following bifenthrin treatment
Magnuson JT, Cryder Z, Andrzejczyk NE, Harraka G, Wolf DC, Gan J, and Schlenk D. Environ Sci Technol (2020) Link
Interpersonal gut microbiome variation drives susceptibility and resistance to cholera infection
Alavi S, Mitchell JD, Cho JY, Liu R, Macbeth JC, and Hsiao A. Cell (2020) Link
Two-dimensional identification and localization of isomers in crystallin peptides using TWIM-MS
Wu HT and Julian RR. Analyst (2020) Link
Human ARMT1 structure and substrate specificity indicates that it is a DUF89 family damage-control phosphatase
Dennis TN, Kenjic N, Kang AS, Lowenson JD, Kirkwood JS, Clarke SG, and Perry J. J Struct Biol (2020) Link
Conserved metabolite regulation of stress granule assembly via AdoMet
Begovich K, Vu AQ, Yeo G, and Wilhelm JE. J Cell Biol (2020) Link
The use of non-targeted metabolomics to assess the toxicity of bifenthrin to juvenile Chinook salmon (Oncorhynchus tshawytscha)
Magnuson JT, Giroux M, Gryder Z, Gan J, and Schlenk D. Aquat Toxicol (2020) Link
Characterizing woody breast myopathy in a meat broiler line by heat production, microbiota, and plasma metabolites
Maharjan P, Hilton K, Weil J, Suesuttajit N, Beitia A, Owens CM, and Coon C. Front. Vet. Sci. (2020) Link
Symbiont population control by host-symbiont metabolic interaction in Symbiodiniaceae-cnidarian associations
Xiang T, Lehnrt E, Jinkerson RE, Clowez S, Kim RG, DeNofrio JC, Pringle JR, and Grossman AR. Nat Commun (2020) Link
2019
Absorptive transport of amino acids by the rat colon
Chen Y, Dinges MM, Green A, Cramer SE, Larive CK, and Lytle C. Am J Physiol (2019) Link
Cadmium and selenate exposure affects the honey bee microbiome and metabolome, and bee-associated bacteria show potential for bioaccumulation
Rothman JA, Leger L, Kirkwood JS, and McFrederick QS. Appl Environ Microbiol (2019) Link
Metabolite biomarkers of chlorothalonil exposure in earthworms, coelomic fluid, and coelomocytes
Griffith CM, Thai AC, and Larive CK. Sci Total Environ (2019) Link
Maternal-to-zygotic transitions as a potential target for niclosamide during early embryogenesis
Vliet SMF, Dasgupta S, Sparks NRL, Kirkwood JS, Vollaro A, Hur M, Zur Nieden NI, and Volz DC. Toxicol Appl Pharmacol (2019) Link
Complex interplay among nuclear receptor ligands, cytosine methylation, and the metabolome in driving tris(1,3-dichloro-2-propyl)phosphate-induced epiboly defects in zebrafish
Dasgupta S, Vliet SMF, Cheng V, Mitchell CA, Kirkwood JS, Vollaro A, Hur M, and Volz DC. Environ Sci Technol (2019) Link
mRNA-sequencing identifies liver as a potential target organ for triphenyl phosphate in embryonic zebrafish
Reddam A, Mitchell CA, Dasgupta S, Kirkwood JS, Vollaro A, Hur M, and Volz DC. Toxicol Sci (2019) Link
Synthesis and structure reassignment of malylglutamate, a recently discovered earthworm metabolite
Griffith CM, Feceu A, Larive CK, and Martin DBC. J Nat Prod (2019) Link